Bioinformatic_Tools

 

The following bioinformatic tools and datasets are available for download and use by following the respective link.

 

• JACoPx - ImageJ plugin implementing RWC algorithm (including Synthetic datasets) (Singan et al. 2011, BMC Bioinformatics 12:407)
• RWC_Co-localization.script - Acapella script implementing RWC algorithm
• MeasureCorrelationx - CellProfiler module implementing RWC algorithm 
• Rab14 and Rab33b confocal test images and texture feature analysis results 

 

 

Please cite our works:

 

Dual channel rank-based intensity weighting for quantitative co-localization of microscopy images

VR Singan, TR Jones, KM Curran, JC Simpson

BMC bioinformatics 12 (1), 407

 

Quantitative image analysis approaches for probing rab gtpase localization and function in mammalian cells

VR Singan, K Handzic, JC Simpson

Biochemical Society Transactions 40 (6), 1389

 

Implementation of the Rank-Weighted Co-localization (RWC) algorithm in multiple image analysis platforms for quantitative analysis of microscopy images

VR Singan, JC Simpson

Source Code for Biology and Medicine 11 (2)